stanford-deidentifier-base EU AI Act Compliance Profile

Stanford de-identifier was trained on a variety of radiology and biomedical documents with the goal of automatising the de-identification process while reaching satisfactory accuracy for use in production. Manuscript in-proceedings.

These model weights are the recommended ones among all available deidentifier weights.

Associated github repo: https://github.com/MIDRC/Stanford_Penn_Deidentifier

Acknowledgement

This work was supported in part by the Medical Imaging and Data Resource Center (MIDRC), which is funded by the National Institute of Biomedical Imaging and Bioengineering (NIBIB) of the National Institutes of Health under contract 75N92020D00021 and through The Advanced Research Projects Agency for Health (ARPA-H)

Citation

@article{10.1093/jamia/ocac219,
    author = {Chambon, Pierre J and Wu, Christopher and Steinkamp, Jackson M and Adleberg, Jason and Cook, Tessa S and Langlotz, Curtis P},
    title = "{Automated deidentification of radiology reports combining transformer and “hide in plain sight” rule-based methods}",
    journal = {Journal of the American Medical Informatics Association},
    year = {2022},
    month = {11},
    abstract = "{To develop an automated deidentification pipeline for radiology reports that detect protected health information (PHI) entities and replaces them with realistic surrogates “hiding in plain sight.”In this retrospective study, 999 chest X-ray and CT reports collected between November 2019 and November 2020 were annotated for PHI at the token level and combined with 3001 X-rays and 2193 medical notes previously labeled, forming a large multi-institutional and cross-domain dataset of 6193 documents. Two radiology test sets, from a known and a new institution, as well as i2b2 2006 and 2014 test sets, served as an evaluation set to estimate model performance and to compare it with previously released deidentification tools. Several PHI detection models were developed based on different training datasets

Your obligations as a stanford-deidentifier-base deployer

Track your progress

Sign up to track obligations, receive deadline reminders, and generate audit packages.

Tags

Languages

Library